Lola

(2005)

A bioinformatics tool for extraction and pairwise comparison of genetic sequences.
(Led to publication in Oxford Journal)

Fully configurable sequence extractor (positions, length, offsets, exclusion, ..)
Multiple, extensible set of distance-methods (elementwise, edit-distance, ..)
Instant manual comparison of two or more elements
Automatic cross-comparison of all elements (within one or two sets) with distance-threshold
Window-Scan with fully configurable parameters (start, stop, window size, )
Sliding window-scanning
Clustering and visualization with indiji-dot-engine